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Mitochondria directly interact with the nuclear pore complex

Researchers have discovered that mitochondria directly interact with the nuclear pore complex, which could provide new insights into cellular communication and disease mechanisms. The study utilized various genomic and proteomic techniques, including RNA-seq, ChIP-seq, ATAC-seq, and proteomics data, along with CRISPR-edited cell lines and mouse models. The research also includes computational models for ATP diffusion and evolutionary analysis of the RANBP2 protein.

Data availability

All large datasets have been deposited as raw files: RNA-seq ( GSE325290 ), ChIP–seq ( GSE324951 ), ATAC-seq ( GSE324952 ) and proteomics ( PXD065792 and PXD065793 ). Analysed, curated datasets, required for the conclusions described in this article, can be found in the Supplementary Information . Biological models (CRISPR-edited cell lines and mouse model) are available on request to the corresponding author.  Source data are provided with this paper.

Code availability

The code used in the biophysical model of ATP diffusion is accessible and available in Google Colab ( https://colab.research.google.com/drive/10ufpBhsLk96DidzzFEsj79KGXr2iGR64?usp=sharing ). The code used in phylogenetic analyses of vertebrate RANBP2 is accessible and available in a Github repository ( https://github.com/akwestfall/EvolutionRANBP2 ).

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Source document: An association between mitochondria and the endoplasmic reticulum in cells of the pseudobranch gland of a teleost

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Nature NewsParty-alignedCenter11 days ago
Mitochondria directly interact with the nuclear pore complex

Researchers have discovered that mitochondria directly interact with the nuclear pore complex, which could provide new insights into cellular communication and disease mechanisms. The study utilized various genomic and proteomic techniques, including RNA-seq, ChIP-seq, ATAC-seq, and proteomics data, along with CRISPR-edited cell lines and mouse models. The research also includes computational models for ATP diffusion and evolutionary analysis of the RANBP2 protein.

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